I'm having issues with wine, It is a black window, sound works fine, this only happens on anything that is uses 3D/2D graphics.
I'm using a GMA 3100 graphics card, and have no clue why this is happening, It is rather annoying.
I recommend checking out winecfg.
From your terminal, run:
winecfgWindows 7, I get black boxes and weird stuff. Changing it to Windows XP fixes the black areas.I think at one point in my particular HeidiSQL issue, there was mention of intel driver issue, so I think it's worth mentioning that could you have a specific piece of hardware causing the issue. This would of course make it hard to reproduce, but as such, I think it's worth experimenting with the Windows Version options in winecfg to see if you can circumvent it.
There are some other graphics-related settings as well, not many but some. Good luck.
There might be the following issues present:
You haven't installed the necessary drivers for your graphics card.
You are trying to run a DX10 / DX11 application. Those aren't supported at the moment. (Though there are people who reached limited success with them.)
You didn't install all the dll's needed by your application. You can use winetricks for that.