I know you can use libreoffice as a command line tool and one parameter to convert formats is --convert-to, I do not know of other programs.
However, I do not know how to make it work, what do I have to type with libreoffice or another program to convert from excel to calc or the other way round?
sudo; then you have the problem of the created files being root-owned, and that will continue until you're using root for everything - almost entirely defeating the point of having separate accounts. – wizzwizz4 Apr 25 '17 at 19:57